PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908447
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 274aa    MW: 29881.3 Da    PI: 10.3415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908447genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.6e-2259155190
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                f k lt+sdv+k++rl +p+k a ++       +g  + +  l++ed++g  W ++++++++s+++vltkGW +Fvk+++L  gD+v F+   g++++
  462908447  59 FSKRLTKSDVGKLNRLLIPRKEAGRFfptalgaMGADALP-FLIFEDSTGVIWHFRYTFWQSSKTFVLTKGWIRFVKEKKLSNGDTVFFYQRaGEDSK 155
                8899*******************999*****995555676.6889*********************************************44133444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2756153IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-2157147No hitNo description
SuperFamilySSF1019361.96E-2358160IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1859157IPR003340B3 DNA binding domain
SMARTSM010193.6E-1159165IPR003340B3 DNA binding domain
PROSITE profilePS5086312.15359165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQGEHTPMMH QSLLSMVNPV LSPIYGAPSA PMSAPVFPSG GGASALLGGG QGVDMDFMFS  60
KRLTKSDVGK LNRLLIPRKE AGRFFPTALG AMGADALPFL IFEDSTGVIW HFRYTFWQSS  120
KTFVLTKGWI RFVKEKKLSN GDTVFFYQRA GEDSKTMHRY IYFKKQDQVS FVPHDVPPPS  180
GTLNDSWLRK ALISSSHYTT NMGWKHVSSG SMGATPANLP ILPPSFVPQV PALGGGLGPA  240
KKRLRLFGVE INIPPHITTD ETFSHHAGSN NGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-265815513109DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-32B3 family protein